Cleanonupdate only checks to see if the media is present or not. If not, then it is removed from the library. (It doesn't check if the nfo infomation is the same as in the library.)
All your doing (and I was too) is altering the nfo data. Cleanonupdate still see's the media as it's still present, so nothing is removed from library, and no update is done.
Two options.
1). Move the media incl nfo, jpg's etc to a temp place outside of what your library scans. On Library update, this media will be removed (as long as cleanonupdate is set). Move the media back and redo Library update. New nfo info will now scan in.
2). press info for the media in your library and select 'Refresh'. This will re-scan just that media. It will remove any library info it has, and reload what is stored with your media file.
Problem with No. 2 is if you have altered alot of nfo's, you have to do it for each media in your library.
Trial and error was how I found this out. Cleanonupdate is only good for when you remove files wherever they're stored (for me on my NAS).
I hope this is of help


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